Sloppy systems biology: tight predictions with loose parameters

ORAL

Abstract

Directly measuring the parameters involved in dynamical models of cellular processes is typically very difficult, and collectively fitting such parameters to other data often yields large parameter uncertainties. Nonetheless, a collective fit which only weakly constrains model parameters may strongly constrain model \emph{predictions}, if the model is ill-conditioned: much more sensitive to some directions in parameter space than others. In the quadratic approximation, the model sensitivities are proportional to the inverse square roots of the hessian matrix eigenvalues. Using a collection of 14 models from the systems biology literature, we show that for large systems the eigenvalue spectra are universally \emph{sloppy}; they span huge ranges ($> 10^6$) and have approximately constant logarithmic spacing. Thus the models are ill-conditioned and have no well-defined cutoff between important and unimportant parameter combinations. This universal sloppiness suggests that collective fits will often poorly constrain parameters but usefully constrain many predictions.

Authors

  • James Sethna

    LASSP, Cornell University, Laboratory of Atomic and Solid State Physics, Cornell University

  • Ryan Gutenkunst

    Laboratory of Atomic and Solid State Physics, Cornell University

  • Joshua Waterfall

    Laboratory of Atomic and Solid State Physics, Cornell University

  • Fergal Casey

    Center for Applied Mathematics, Cornell University

  • Kevin Brown

    Department of Molecular and Cellular Biology, Harvard University

  • Christopher Myers

    Cornell University, Cornell Theory Center, Cornell University