Structural motifs of biomolecules

ORAL

Abstract

Biomolecular structures are assemblies of emergent anisotropic building modules such as uniaxial helices or biaxial strands. We provide an approach to understanding a marginally compact phase of matter that is occupied by proteins and DNA. This phase, which is in some respects analogous to the liquid crystal phase for chain molecules, stabilizes a range of shapes that can be obtained by sequence-independent interactions occurring intra- and intermolecularly between polymeric molecules. We present a singularity free self-interaction for a tube in the continuum limit and show that this results in the tube being positioned in the marginally compact phase. Our work provides a unified framework for understanding the building blocks of biomolecules.

Authors

  • Hoang Trinh

    Penn State University, University Park, PA 16801, USA

  • Jayanth Banavar

    Penn State University, University Park, PA 16801, USA

  • Amos Maritan

    Universita di Padova, 35131 Padova, Italy

  • Chiara Poletto

    Universita di Padova, 35131 Padova, Italy

  • Antonio Trovato

    Universita di Padova, 35131 Padova, Italy

  • John Maddocks

    Ecole Polytechnique Federale de Lausanne, CH-1015 Lausanne, Switzerland

  • Andrzej Stasiak

    University of Lausanne, CH-1015 Lausanne, Switzerland