Inference and Stochastic Processes in Biophysics

Presentations

• Quantifying the invisible: Bayesian approaches in fluorescence microscopy

  Invited

  March 5, 2018, 11:00 AM – March 5, 2018, 11:36 AM

  Presenters

  • Ioannis Sgouralis

    Physics, Arizona State Univ, Center for Biological Physics, Arizona State University

  Authors

  • Ioannis Sgouralis

    Physics, Arizona State Univ, Center for Biological Physics, Arizona State University

  View abstract →

• Biophysical inference mechanisms face a trade-off between external and internal noise resistance

  ORAL

  March 5, 2018, 11:36 AM – March 5, 2018, 11:48 AM

  Presenters

  • Weerapat Pittayakanchit

    University of Chicago

  Authors

  • Weerapat Pittayakanchit

    University of Chicago

  • Zhiyue Lu

    University of Chicago

  • Justin Chew

    University of Chicago

  • Michael Rust

    University of Chicago

  • Arvind Murugan

    Physics, University of Chicago, University of Chicago, James Franck Institute, University of Chicago

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• Inference of mechanical stresses within the actively migrating cell sheet

  ORAL

  March 5, 2018, 11:48 AM – March 5, 2018, 12:00 PM

  Presenters

  • Yoav Green

    Harvard University

  Authors

  • Yoav Green

    Harvard University

  • James Butler

    Harvard University

  • Jeffery Fredberg

    Harvard University

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• Inference of Network Connectivity from Dynamics

  ORAL

  March 5, 2018, 12:00 PM – March 5, 2018, 12:12 PM

  Presenters

  • Emily SC Ching

    Department of Physics, The Chinese University of Hong Kong

  Authors

  • Emily SC Ching

    Department of Physics, The Chinese University of Hong Kong

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• Adaptive trust in internal models alleviates trade-offs in biophysical inference of the environment

  ORAL

  March 5, 2018, 12:12 PM – March 5, 2018, 12:24 PM

  Presenters

  • Arvind Murugan

    Physics, University of Chicago, University of Chicago, James Franck Institute, University of Chicago

  Authors

  • Amir Bitran

    Harvard University

  • Ofer Kimchi

    Biophysics, Harvard University, Harvard University

  • Mirna Kramar

    Max Planck Institute for Dynamics and Self-Organization

  • Amanda Parker

    University of California, Davis

  • Ching-Hao Wang

    Physics, Boston Univ, Boston University

  • Gopal Pattanayak

    University of Chicago

  • Michael Rust

    University of Chicago

  • Arvind Murugan

    Physics, University of Chicago, University of Chicago, James Franck Institute, University of Chicago

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• Bayesian nonparametrics for biophysics

  ORAL

  March 5, 2018, 12:24 PM – March 5, 2018, 12:36 PM

  Presenters

  • Steve Presse

    Univ of California - San Francisco, Physics and School of Molecular Sciences, Arizona State University

  Authors

  • Steve Presse

    Univ of California - San Francisco, Physics and School of Molecular Sciences, Arizona State University

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• Progress in estimation of mutual information for real-valued data

  ORAL

  March 5, 2018, 12:36 PM – March 5, 2018, 12:48 PM

  Presenters

  • Ilya Nemenman

    Emory Univ, Emory University, Department of Physics, Department of Biology, Emory University

  Authors

  • Caroline Holmes

    Princeton Univ

  • Ilya Nemenman

    Emory Univ, Emory University, Department of Physics, Department of Biology, Emory University

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• The Limitations of Model-Based Experimental Design and Parameter Estimation in Sloppy Systems

  ORAL

  March 5, 2018, 12:48 PM – March 5, 2018, 1:00 PM

  Presenters

  • Mark Transtrum

    Physics & Astronomy, Brigham Young University

  Authors

  • Mark Transtrum

    Physics & Astronomy, Brigham Young University

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• Data-Driven Inference for Jump-Diffusion Models of Neuroscientific Data

  ORAL

  March 5, 2018, 1:00 PM – March 5, 2018, 1:12 PM

  Presenters

  • Alexandre Melanson

    Physics, University of Ottawa

  Authors

  • Alexandre Melanson

    Physics, University of Ottawa

  • Andre Longtin

    Physics, University of Ottawa

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• Multilevel Bayesian Analysis of Biophysical Data in the Presence of Model Inadequacy and Measurement Error

  ORAL

  March 5, 2018, 1:12 PM – March 5, 2018, 1:24 PM

  Presenters

  • Amir Shahmoradi

    Univ of Texas, Austin

  Authors

  • Amir Shahmoradi

    Univ of Texas, Austin

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• Rational Ignorance: Simpler Models Learn More Information from Finite Data

  ORAL

  March 5, 2018, 1:24 PM – March 5, 2018, 1:36 PM

  Presenters

  • Henry Mattingly

    Molecular, Cellular, and Developmental Biology, Yale University

  Authors

  • Henry Mattingly

    Molecular, Cellular, and Developmental Biology, Yale University

  • Mark Transtrum

    Physics and Astronomy, Brigham Young Univ - Provo, Department of Physics and Astronomy, Brigham Young University

  • Michael Abbott

    Institute of Physics, Jagiellonian University

  • Benjamin Machta

    Physics, Yale University, Department of Physics and Systems Biology Institute, Yale University

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• Inference of Transition Rates in a Birth-Death Chain from Conditional Exit Times

  ORAL

  March 5, 2018, 1:36 PM – March 5, 2018, 1:48 PM

  Presenters

  • Pak-Wing Fok

    Mathematical Sciences, University of Delaware

  Authors

  • Pak-Wing Fok

    Mathematical Sciences, University of Delaware

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• Density of isolated particles and the hydrodynamic limit of generalized TASEP models: Application to mRNA translation rate inference

  ORAL

  March 5, 2018, 1:48 PM – March 5, 2018, 2:00 PM

  Presenters

  • Khanh Dao Duc

    Computer Science, UC Berkeley

  Authors

  • Khanh Dao Duc

    Computer Science, UC Berkeley

  • Dan Erdmann-Pham

    Mathematics, UC Berkeley

  • Yun Song

    Computer Science and Statistics, UC Berkeley

  View abstract →