Free Energy Mapping in Biology and Materials Science I
FOCUS · R20
Presentations
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Using the relative entropy to sample free energy landscapes with transferable coarse-grained models
Invited
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Presenters
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M. Scott Shell
Univ of California - Santa Barbara, Chemical Engineering, University of California Santa Barbara
Authors
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M. Scott Shell
Univ of California - Santa Barbara, Chemical Engineering, University of California Santa Barbara
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Tanmoy Sanyal
Chemical Engineering, University of California Santa Barbara
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Addressing Temperature Transferability of structure based Coarse Graining Models
ORAL
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Presenters
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David Rosenberger
Technische Universität Darmstadt
Authors
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David Rosenberger
Technische Universität Darmstadt
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Nico van der Vegt
Technische Universität Darmstadt, Chemistry, Technische Universitaet Darmstadt
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Monte Carlo Sampling with Layered Auxiliary Potentials
ORAL
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Presenters
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Michael Webb
Argonne Natl Lab
Authors
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Michael Webb
Argonne Natl Lab
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Nicholas Jackson
Argonne Natl Lab, The Institute for Molecular Engineering, Argonne National Lab
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Juan De Pablo
Institute for Molecular Engineering, The University of Chicago, Institute for Molecular Engineering, Univ of Chicago, Institute for molecular engineering, The University of Chicago, University of Chicago, Univ of Chicago, Institute for Molecular Engineering, University of Chicago, The Institute for Molecular Engineering, The University of Chicago, Institute of Molecular Engineering, University of Chicago
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Molecular enhanced sampling with autoencoders: On-the-fly nonlinear collective variable discovery and accelerated free energy landscape exploration
ORAL
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Presenters
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Wei Chen
Univ of Illinois - Urbana
Authors
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Wei Chen
Univ of Illinois - Urbana
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Andrew Ferguson
Univ of Illinois - Urbana, Materials Science, University of Illinois at Urbana-Champaign, Material science and engineering, Univ of Illinois - Urbana
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Extracting collective motions underlying nucleosome dynamics via nonlinear manifold learning
ORAL
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Presenters
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Ashley Guo
Institute for Molecular Engineering, Univ of Chicago, Univ of Chicago
Authors
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Ashley Guo
Institute for Molecular Engineering, Univ of Chicago, Univ of Chicago
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Joshua Lequieu
Univ of Chicago, University of California Santa Barbara
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Joshua Moller
Univ of Chicago, University of Chicago
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Juan De Pablo
Institute for Molecular Engineering, The University of Chicago, Institute for Molecular Engineering, Univ of Chicago, Institute for molecular engineering, The University of Chicago, University of Chicago, Univ of Chicago, Institute for Molecular Engineering, University of Chicago, The Institute for Molecular Engineering, The University of Chicago, Institute of Molecular Engineering, University of Chicago
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Learning Free Energies from Molecular Simulation using Artificial Neural Networks
ORAL
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Presenters
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Hythem Sidky
Chemical and Biomolecular Engineering, University of Notre Dame, Univ of Notre Dame, Department of Chemical and Biomolecular Engineering, University of Notre Dame
Authors
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Hythem Sidky
Chemical and Biomolecular Engineering, University of Notre Dame, Univ of Notre Dame, Department of Chemical and Biomolecular Engineering, University of Notre Dame
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Jonathan Whitmer
Chemical & Biomolecular Engineering, University of Notre Dame, Chemical and Biomolecular Engineering, University of Notre Dame, Univ of Notre Dame, Department of Chemical and Biomolecular Engineering, University of Notre Dame
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Using Free Energy Perturbation to Differentiate ssDNA-Wrapped Single-Walled Carbon Nanotube Complexes
ORAL
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Presenters
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Kevin Hinkle
Materials Science and Engineering Division, NIST -Natl Inst of Stds & Tech
Authors
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Kevin Hinkle
Materials Science and Engineering Division, NIST -Natl Inst of Stds & Tech
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Frederick Phelan Jr.
Materials Science and Engineering Division, NIST -Natl Inst of Stds & Tech, Materials Science & Engineering, NIST -Natl Inst of Stds & Tech, National Institute of Standards and Technology
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Adaptive Enhanced Sampling with FUNN: Force-biasing Using Neural Networks
ORAL
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Presenters
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Emre Sevgen
Institute for Molecular Engineering, Univ of Chicago
Authors
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Ashley Guo
Institute for Molecular Engineering, Univ of Chicago, Univ of Chicago
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Emre Sevgen
Institute for Molecular Engineering, Univ of Chicago
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Hythem Sidky
Chemical and Biomolecular Engineering, University of Notre Dame, Univ of Notre Dame, Department of Chemical and Biomolecular Engineering, University of Notre Dame
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Jonathan Whitmer
Chemical & Biomolecular Engineering, University of Notre Dame, Chemical and Biomolecular Engineering, University of Notre Dame, Univ of Notre Dame, Department of Chemical and Biomolecular Engineering, University of Notre Dame
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Juan De Pablo
Institute for Molecular Engineering, The University of Chicago, Institute for Molecular Engineering, Univ of Chicago, Institute for molecular engineering, The University of Chicago, University of Chicago, Univ of Chicago, Institute for Molecular Engineering, University of Chicago, The Institute for Molecular Engineering, The University of Chicago, Institute of Molecular Engineering, University of Chicago
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Path-Accelerated Molecular Dynamics: Parallelizing Molecular Dynamics in Time using Path Integrals
ORAL
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Presenters
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Jorge Rosa
Division of Chemistry and Chemical Engineering, California Institute of Technology
Authors
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Jorge Rosa
Division of Chemistry and Chemical Engineering, California Institute of Technology
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Bin Zhang
Department of Chemistry, Massachusetts Institute of Technology
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Thomas Miller
Caltech, Division of Chemistry and Chemical Engineering, California Institute of Technology, Chemistry and Chemical Engineering, Caltech, California Institute of Technology, Division of Chemistry and Chemical Engineering, Caltech, Chemistry & Chemical Engineering, Caltech
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ABSTRACT WITHDRAWN
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Metadynamics study of protein crystal nucleation and growth
ORAL
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Presenters
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Jens Glaser
Chemical Engineering, Univ of Michigan - Ann Arbor
Authors
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Jens Glaser
Chemical Engineering, Univ of Michigan - Ann Arbor
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Sharon Glotzer
Chemical Engineering, Univ of Michigan - Ann Arbor, Univ of Michigan - Ann Arbor, Department of Chemical Engineering, University of Michigan - Ann Arbor, Department of Chemical Engineering, University of Michigan, Chemical Engineering, University of Michigan, Department of Chemical Engineering, Univ of Michigan - Ann Arbor
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