Physics of Microbiomes and Microbial Communities II

Presentations

• Modeling the influence of metabolic trade-offs on microbiota diversity

  Invited

  March 5, 2019, 2:30 PM – March 5, 2019, 3:06 PM

  Presenters

  • Ned Wingreen

    Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton University, Department of Molecular Biology, Princeton University, Department of Molecular Biology and Lewis-Sigler Institute for Integrative Genomics, Princeton University

  Authors

  • Ned Wingreen

    Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton University, Department of Molecular Biology, Princeton University, Department of Molecular Biology and Lewis-Sigler Institute for Integrative Genomics, Princeton University

  View abstract →

• The motility can drive spatial exclusion and promote coexistence in bacterial populations

  ORAL

  March 5, 2019, 3:06 PM – March 5, 2019, 3:18 PM

  Presenters

  • Ercag Pince

    Deparment of Living Matter, AMOLF

  Authors

  • Ercag Pince

    Deparment of Living Matter, AMOLF

  • Sebastian Gude

    Quantitative Biology, UC Berkeley

  • Katja M. Taute

    Rowland Institute at Harvard

  • Tom S Shimizu

    AMOLF, Deparment of Living Matter, AMOLF

  • Sander J Tans

    Deparment of Living Matter, AMOLF

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• Single cell segmentation in microbiome imaging

  ORAL

  March 5, 2019, 3:18 PM – March 5, 2019, 3:30 PM

  Presenters

  • Hao Shi

    Department of Physics, Cornell University

  Authors

  • Hao Shi

    Department of Physics, Cornell University

  • Iwijn De Vlaminck

    Meinig School of Biomedical Engineering, Cornell University

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• Community coexistence and stability: insights from a mediator-explicit model of microbial interactions

  ORAL

  March 5, 2019, 3:30 PM – March 5, 2019, 3:42 PM

  Presenters

  • Babak Momeni

    Boston College

  Authors

  • Sandra Dedrick

    Boston College

  • Samantha Dyckman

    Boston College

  • Babak Momeni

    Boston College

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• Examining Pairwise and Multi-Species Interactions in Larval Zebrafish

  ORAL

  March 5, 2019, 3:42 PM – March 5, 2019, 3:54 PM

  Presenters

  • Edouard Hay

    Physics, University of Oregon

  Authors

  • Edouard Hay

    Physics, University of Oregon

  • Deepika Sundarraman

    Physics, University of Oregon

  • Dylan Martins

    University of Oregon

  • Drew Shields

    University of Oregon

  • Karen Guillemin

    University of Oregon

  • Raghuveer Parthasarathy

    Physics, University of Oregon, University of Oregon

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• Depletion Zone Following the Spread of a Bacterial Colony

  ORAL

  March 5, 2019, 3:54 PM – March 5, 2019, 4:06 PM

  Presenters

  • Hui Ma

    Brown University

  Authors

  • Hui Ma

    Brown University

  • Jordan Bell

    Brown University

  • Jay Tang

    Brown University

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• Emergence of order and structure in biofilms growing in fluid shear

  ORAL

  March 5, 2019, 4:06 PM – March 5, 2019, 4:18 PM

  Presenters

  • Philip Pearce

    Massachusetts Institute of Technology

  Authors

  • Philip Pearce

    Massachusetts Institute of Technology

  • Raimo Hartmann

    Max Planck Institute for Terrestrial Microbiology

  • Praveen Singh

    Max Planck Institute for Terrestrial Microbiology

  • Rachel Mok

    Massachusetts Institute of Technology, Department of Applied Mathematics, Massachusetts Institute of Technology

  • Boya Song

    Massachusetts Institute of Technology

  • Dominic Skinner

    Massachusetts Institute of Technology

  • Jeffrey Oishi

    Bates College

  • Jorn Dunkel

    Massachusetts Institute of Technology, Department of Applied Mathematics, Massachusetts Institute of Technology, Department of Mathematics, Massachusetts Institute of Technology

  • Knut Drescher

    Max Planck Institute for Terrestrial Microbiology

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• ABSTRACT WITHDRAWN

  COFFEE_KLATCH

  March 5, 2019, 4:18 PM – March 5, 2019, 4:30 PM

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• Role of confinement in growing bacterial colonies

  ORAL

  March 5, 2019, 4:30 PM – March 5, 2019, 4:42 PM

  Presenters

  • Zhihong You

    Leiden University

  Authors

  • Zhihong You

    Leiden University

  • Daniel Pearce

    University of Geneva, Dept. Of Physics, University of Geneva

  • Luca Giomi

    Leiden University

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• Mechanical interactions in growing yeast colonies

  ORAL

  March 5, 2019, 4:42 PM – March 5, 2019, 4:54 PM

  Presenters

  • Andrea Giometto

    Harvard University

  Authors

  • Andrea Giometto

    Harvard University

  • David R. Nelson

    Harvard University

  • Andrew Murray

    Harvard University

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• Dynamic self-organization of microorganisms far from equilibrium

  ORAL

  March 5, 2019, 4:54 PM – March 5, 2019, 5:06 PM

  Presenters

  • Roujin Ghaffari

    UNAM, Bilkent University

  Authors

  • Roujin Ghaffari

    UNAM, Bilkent University

  • Sezin Galigolu

    UNAM, Bilkent University

  • Evren Doruk Engin

    Institute of Biotechnology, Ankara University

  • Serim Ilday

    Bilkent University, UNAM, Bilkent University

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• Effect of cellular and environmental conditions on bacterial collective oscillation

  ORAL

  March 5, 2019, 5:06 PM – March 5, 2019, 5:18 PM

  Presenters

  • Song Liu

    The Chinese University of Hong Kong

  Authors

  • Song Liu

    The Chinese University of Hong Kong

  • Yilin Wu

    Department of Physics and Shenzhen Research Institude, The Chinese University of Hong Kong, The Chinese University of Hong Kong

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• Emergent oscillations in dense adaptive cell populations

  ORAL

  March 5, 2019, 5:18 PM – March 5, 2019, 5:30 PM

  Presenters

  • Shouwen Wang

    Harvard Medical School

  Authors

  • Shouwen Wang

    Harvard Medical School

  • Lei-Han tang

    Complex System, Beijing Computational Science Research Center

  View abstract →