Molecular Machines II

Presentations

• Global conformational changes and their allosteric control by ubiquitin regulate protein degradation of the 26S proteasome molecular machine

  ORAL · Invited

  March 16, 2022, 12:30 PM – March 16, 2022, 1:06 PM

  Presenters

  • Andreas Martin

    UC Berkeley

  Authors

  • Andreas Martin

    UC Berkeley

  • Zaw Htet

    HHMI, UC Berkeley

  • Erik Jonsson

    UC Berkeley

  • Erika Lopez-Alfonzo

    UC Berkeley

  • Ken Dong

    HHMI, UC Berkeley

  • Jared Bard

    University of Chicago

  View abstract →

• Asymmetric Conformational Dynamics of the ClpB Disaggregase Nanomachine

  ORAL

  March 16, 2022, 1:06 PM – March 16, 2022, 1:18 PM

  Publication: Damre, Mangesh, Ashan Dayananda, Rohith Anand Varikoti, George Stan, and Ruxandra I. Dima. "Factors underlying asymmetric pore dynamics of disaggregase and microtubule-severing AAA+ machines." Biophysical Journal 120, no. 16 (2021): 3437-3454.

  Presenters

  • Ashan Dayananda

    University Of Cincinnati

  Authors

  • Ashan Dayananda

    University Of Cincinnati

  • Ruxandra I Dima

    University Of Cincinnati

  • George N Stan

    University Of Cincinnati

  View abstract →

• A General Bayesian Framework for Learning Molecular Kinetics From Single Photon Arrivals.

  ORAL

  March 16, 2022, 1:18 PM – March 16, 2022, 1:30 PM

  Publication: Planned Publication: Ayush Saurabh, Oliver Stach, Ioannis Sgouralis, Daniel Nettels, Ben Schuler, and Steve Presse. A General Bayesian Framework for Learning Molecular Kinetics From Single Photon Arrivals.

  Presenters

  • Ayush Saurabh

    Arizona State University

  Authors

  • Ayush Saurabh

    Arizona State University

  • Steve Presse

    ASU

  • Ioannis Sgouralis

    Arizona State University

  View abstract →

• Ambigrammatic Viruses

  ORAL

  March 16, 2022, 1:30 PM – March 16, 2022, 1:42 PM

  Publication: An Exploration of Ambigrammatic Sequences in Narnaviruses,
  J. L. DeRisi, G. Huber, A. Kistler, H. Retallack, M. Wilkinson and D. Yllanes, Sci. Rep., 9, 17982, (2019).
  Polysomally Protected Viruses,
  M. Wilkinson, D. Yllanes and G. Huber, Phys. Biol., 18, 046009, (2021).
  Polymorphism of Genetic Ambigrams,
  G. Dudas, G. Huber, M. Wilkinson and D. Yllanes, Virus Evolution, 7, veab038, (2021).

  Presenters

  • Michael Wilkinson

    Chan-Zuckerberg Biohub

  Authors

  • Michael Wilkinson

    Chan-Zuckerberg Biohub

  View abstract →

• Impact of the localization of the RNA binding domain of protein shells on the stability of virus particles

  ORAL

  March 16, 2022, 1:42 PM – March 16, 2022, 1:54 PM

  Presenters

  • Mohammadamin Safdari

    University of California, Riverside

  Authors

  • Mohammadamin Safdari

    University of California, Riverside

  • Yinan Dong

    University of California, Riverside

  • Paul Van der Schoot

    Eindhoven University of Technology

  • Roya Zandi

    University of California, Riverside

  View abstract →

• Ionic propulsion in a non-motile dinoflagellate.

  ORAL

  March 16, 2022, 1:54 PM – March 16, 2022, 2:06 PM

  Presenters

  • Adam G Larson

    Stanford University

  Authors

  • Adam G Larson

    Stanford University

  View abstract →

• Quantitative in vivo measurement of fork velocity by deep sequencing

  ORAL

  March 16, 2022, 2:06 PM – March 16, 2022, 2:18 PM

  Publication: Planned: Quantitative in vivo measurement of fork velocity by deep sequencing.

  Presenters

  • Dean Huang

    University of Washington

  Authors

  • Dean Huang

    University of Washington

  • Paul Wiggins

    University of Washington

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• Accessibility Patterns and Folding Frustration in Long Telomeric Overhangs

  ORAL

  March 16, 2022, 2:18 PM – March 16, 2022, 2:30 PM

  Presenters

  • Hamza Balci

    Kent State University

  Authors

  • Hamza Balci

    Kent State University

  • sajad shiekh

    Kent State University

  • Golam Mustafa

    Kent State University

  • Eric Yokie

    Kent State University

  • Mohammed E Hoque

    Kent State University

  • John J Portman

    Kent State University

  View abstract →

• Insertions and deletions affect RNA-protein interactions through RNA secondary structure

  ORAL

  March 16, 2022, 2:30 PM – March 16, 2022, 2:42 PM

  Presenters

  • Ralf Bundschuh

    Ohio State University, Ohio State Univ - Columbus

  Authors

  • Ralf Bundschuh

    Ohio State University, Ohio State Univ - Columbus

  • Carlos Owusu Ansah

    Ohio State University

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• Conformational dynamics of the Grp94 molecular chaperone in protein remodeling

  ORAL

  March 16, 2022, 2:42 PM – March 16, 2022, 2:54 PM

  Presenters

  • ANDREA N KRAVATS

    Miami University

  Authors

  • John Paul Alao

    Miami University

  • Molly Wynveen

    Miami University

  • IK Obaseki

    Miami University

  • Katherine Connors

    Miami University

  • Quynh Nguyen

    Miami University

  • Alex Tam

    Miami University

  • ANDREA N KRAVATS

    Miami University

  View abstract →

• New paradigms for bacteria sensing the world: molecular mechanisms of mechanosensation

  ORAL

  March 16, 2022, 2:54 PM – March 16, 2022, 3:06 PM

  Presenters

  • David Gomez

    New York University (NYU)

  Authors

  • David Gomez

    New York University (NYU)

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• Investigating structural stability of transmembrane Ligand-Appended Pillar[n]ene (LAP)

  ORAL

  March 16, 2022, 3:06 PM – March 16, 2022, 3:18 PM

  Presenters

  • Tyler J Duncan

    University of Texas at Austin

  Authors

  • Tyler J Duncan

    University of Texas at Austin

  • Harekrushna Behera

    University of Texas at Austin

  • Manish Kumar

    University of Texas at Austin

  • Venkatraghavan Ganesan

    University of Texas at Austin

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• Building an artificial neuron with simple hydrophobic nanopores: a one component memristor

  ORAL

  March 16, 2022, 3:18 PM – March 16, 2022, 3:30 PM

  Presenters

  • Goncalo S Paulo

    DIMA - Sapienza University of Rome

  Authors

  • Goncalo S Paulo

    DIMA - Sapienza University of Rome

  • Alberto Gubbiotti

    Univ of Rome La Sapienza

  • Alberto Giacomello

    Univ of Rome La Sapienza

  View abstract →