Connecting relevant information to coarse-graining in biological systems

ORAL · Invited

Abstract

Biological systems must selectively encode partial information about the environment, as dictated by the capacity constraints at work in all living organisms. For example, we cannot see every feature of the light field that reaches our eyes; temporal resolution is limited by transmission noise and delays, and spatial resolution is limited by the finite number of photoreceptors and output cells in the retina. Classical efficient coding theory describes how sensory systems can maximize information transmission given such capacity constraints, but it treats all input features equally. Not all inputs are, however, of equal value to the organism. Our work quantifies whether and how the brain selectively encodes stimulus features, specifically predictive features, that are most useful for fast and effective movements. We have shown that efficient predictive computation starts at the earliest stages of the visual system, in the retina. We borrow techniques from statistical physics and information theory to assess how we get terrific, predictive vision from these imperfect (lagged and noisy) component parts. In broader terms, we aim to build a more complete theory of efficient encoding in the brain, and along the way have found some intriguing connections between formal notions of coarse graining in biology and physics.

* This work was supported in part by the National Science Foundation, through the Center for the Physics of Biological Function (PHY-1734030); and by the University of Chicago Materials Research Science and Engineering Center, which is funded by the National Science Foundation under award number DMR-2011854.

Publication: Palmer, S. E., Marre, O., Berry, M. J., & Bialek, W. (2015). Predictive information in a sensory population. Proceedings of the National Academy of Sciences, 112(22), 6908-6913.

Sederberg, A. J., MacLean, J. N., & Palmer, S. E. (2018). Learning to make external sensory stimulus predictions using internal correlations in populations of neurons. Proceedings of the National Academy of Sciences, 115(5), 1105-1110.

Sachdeva, V., Mora, T., Walczak, A. M., & Palmer, S. E. (2021). Optimal prediction with resource constraints using the information bottleneck. PLOS Computational Biology, 17(3), e1008743.

Kline, A. G., & Palmer, S. E. (2022). Gaussian information bottleneck and the non-perturbative renormalization group. New journal of physics, 24(3), 033007.

Kline, A. G., & Palmer, S. E. (2023). Multi-Relevance: Coexisting but Distinct Notions of Scale in Large Systems. arXiv preprint arXiv:2305.11009.



Presenters

  • Stephanie E Palmer

    University of Chicago

Authors

  • Stephanie E Palmer

    University of Chicago