All-or-none protein-like folding of a homopolymer chain
ORAL
Abstract
Many small proteins fold via a first-order ``all-or-none'' transition directly from an expanded coil to a compact native state. Here we report an analogous direct freezing transition from an expanded coil to a compact crystallite for a simple flexible homopolymer. Wang-Landau sampling is used to construct the complete density of states for square-well chains up to length 256. Analysis within both the microcanonical and canonical ensembles shows that, for a chain with sufficiently short-range interactions, the usual polymer collapse transition is preempted by a direct freezing transition. Despite the non-unique homopolymer ground state, the thermodynamics of this direct freezing transition are identical to the thermodynamics of two-state protein folding. A free energy barrier separates a high entropy ensemble of unfolded states from a low entropy set of crystallite states and the transition proceeds via the formation of a transition-state folding nucleus. An Arrhenius analysis of the folding/unfolding free energy barrier yields a Chevron plot characteristic of proteins and the model chain satisfies the van't Hoff calorimetric criterion for two-state folding.
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Authors
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Mark Taylor
Hiram College, Hiram, OH
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Zachary S. Goldman
Johannes Gutenberg Universit\"at Mainz, Johannes-Gutenberg-Unversitat, Mainz, Germany, Helsinki University of Technology and Technical University of Denmark, Physics Department, University of Michigan, Univ. Akron, College of Engineering, The Ohio State University, Dept. of Physics \& Astronomy, Denison University
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Zachary S. Goldman
Johannes Gutenberg Universit\"at Mainz, Johannes-Gutenberg-Unversitat, Mainz, Germany, Helsinki University of Technology and Technical University of Denmark, Physics Department, University of Michigan, Univ. Akron, College of Engineering, The Ohio State University, Dept. of Physics \& Astronomy, Denison University