Simulating light propagation in brain tissue using ray tracing

POSTER

Abstract

The advent of two-photon fluorescence microscopy (TPFM) has opened great opportunities in neurosciences. However, data interpretation of TPFM on dyes with small signal changes such as beta-nicotinamide adenine dinucleotide (NADH) face enormous challenges because the measured signal change is distorted by hemodynamic changes. Prior work by Baraghis et al corrected for this using a single value found empirically. We calculate the point to point correction factor using a 3D microvasculature and check the validity of the single value correction scheme. We use ray tracing scheme to simulate two-photon fluorescence and consider light scattering and absorption due to blood vessels. We calculated the correction factors of NADH signal in a rat model and found that the correction factor was homogeneous beyond 140 microns below the cortical surface, indicating that a single value correction scheme may be adequate in deeper tissues. We will present our new results on a mouse model to test the generality of the single value correction scheme. Our study allows more accurate interpretation of functional imaging studies.

Authors

  • Thomas Sauer

    John Carroll University

  • Winslow Cotton

    John Carroll University

  • Peifang Tian

    John Carroll University

  • Frazier Baker

    Youngstown State University, Kent State University, Liquid Crystal Institute, Kent State University, Department of Biological Sciences, Kent State University, Department of Physics, Department of Chemistry and Biochemistry, Kent State University, Stony Brook Univ, Ohio Univ, Institute for Advanced Simulation, Institut fur Kernphysik, and Julich Center, Bowling Green State University, Dept. of Physics, Hiram College, Ohio State Univ - Columbus, Kent State University, Psychology Dept, Cleveland State University, Physics Dept, Cleveland State University, Chemical Physics Interdisciplinary Program and Liquid Crystal Institute, Kent State University, Kent, OH 44242-0001, USA, Univ of Konstanz, Univ College London, NIST, Hiroshima Univ, KIT, Missouri University of Science and Technology, University of California, San Diego, Georgia Institute of Technology, KSU, SKKU, Lock Haven Univ, Massachusetts General Hospital, University of Science and Technology of China, Yale University, Shanghai Institute of Microsystem and Information Technology, CAS, Nanjing University, Liquid Crystal Institute and Chemical Physics Interdisciplinary Program, Kent State University, Kent, OH 44242, USA, Department of Physics, Kent State University, Kent OH 44242, Department of Electro-Optic Engineering Ilse Katz Institute for Nanoscale Science and Technology Ben Gurion University, Beer Sheva 84105, Israel, Ohio University Zanesville

  • Frazier Baker

    Youngstown State University, Kent State University, Liquid Crystal Institute, Kent State University, Department of Biological Sciences, Kent State University, Department of Physics, Department of Chemistry and Biochemistry, Kent State University, Stony Brook Univ, Ohio Univ, Institute for Advanced Simulation, Institut fur Kernphysik, and Julich Center, Bowling Green State University, Dept. of Physics, Hiram College, Ohio State Univ - Columbus, Kent State University, Psychology Dept, Cleveland State University, Physics Dept, Cleveland State University, Chemical Physics Interdisciplinary Program and Liquid Crystal Institute, Kent State University, Kent, OH 44242-0001, USA, Univ of Konstanz, Univ College London, NIST, Hiroshima Univ, KIT, Missouri University of Science and Technology, University of California, San Diego, Georgia Institute of Technology, KSU, SKKU, Lock Haven Univ, Massachusetts General Hospital, University of Science and Technology of China, Yale University, Shanghai Institute of Microsystem and Information Technology, CAS, Nanjing University, Liquid Crystal Institute and Chemical Physics Interdisciplinary Program, Kent State University, Kent, OH 44242, USA, Department of Physics, Kent State University, Kent OH 44242, Department of Electro-Optic Engineering Ilse Katz Institute for Nanoscale Science and Technology Ben Gurion University, Beer Sheva 84105, Israel, Ohio University Zanesville

  • Frazier Baker

    Youngstown State University, Kent State University, Liquid Crystal Institute, Kent State University, Department of Biological Sciences, Kent State University, Department of Physics, Department of Chemistry and Biochemistry, Kent State University, Stony Brook Univ, Ohio Univ, Institute for Advanced Simulation, Institut fur Kernphysik, and Julich Center, Bowling Green State University, Dept. of Physics, Hiram College, Ohio State Univ - Columbus, Kent State University, Psychology Dept, Cleveland State University, Physics Dept, Cleveland State University, Chemical Physics Interdisciplinary Program and Liquid Crystal Institute, Kent State University, Kent, OH 44242-0001, USA, Univ of Konstanz, Univ College London, NIST, Hiroshima Univ, KIT, Missouri University of Science and Technology, University of California, San Diego, Georgia Institute of Technology, KSU, SKKU, Lock Haven Univ, Massachusetts General Hospital, University of Science and Technology of China, Yale University, Shanghai Institute of Microsystem and Information Technology, CAS, Nanjing University, Liquid Crystal Institute and Chemical Physics Interdisciplinary Program, Kent State University, Kent, OH 44242, USA, Department of Physics, Kent State University, Kent OH 44242, Department of Electro-Optic Engineering Ilse Katz Institute for Nanoscale Science and Technology Ben Gurion University, Beer Sheva 84105, Israel, Ohio University Zanesville

  • Frazier Baker

    Youngstown State University, Kent State University, Liquid Crystal Institute, Kent State University, Department of Biological Sciences, Kent State University, Department of Physics, Department of Chemistry and Biochemistry, Kent State University, Stony Brook Univ, Ohio Univ, Institute for Advanced Simulation, Institut fur Kernphysik, and Julich Center, Bowling Green State University, Dept. of Physics, Hiram College, Ohio State Univ - Columbus, Kent State University, Psychology Dept, Cleveland State University, Physics Dept, Cleveland State University, Chemical Physics Interdisciplinary Program and Liquid Crystal Institute, Kent State University, Kent, OH 44242-0001, USA, Univ of Konstanz, Univ College London, NIST, Hiroshima Univ, KIT, Missouri University of Science and Technology, University of California, San Diego, Georgia Institute of Technology, KSU, SKKU, Lock Haven Univ, Massachusetts General Hospital, University of Science and Technology of China, Yale University, Shanghai Institute of Microsystem and Information Technology, CAS, Nanjing University, Liquid Crystal Institute and Chemical Physics Interdisciplinary Program, Kent State University, Kent, OH 44242, USA, Department of Physics, Kent State University, Kent OH 44242, Department of Electro-Optic Engineering Ilse Katz Institute for Nanoscale Science and Technology Ben Gurion University, Beer Sheva 84105, Israel, Ohio University Zanesville

  • Frazier Baker

    Youngstown State University, Kent State University, Liquid Crystal Institute, Kent State University, Department of Biological Sciences, Kent State University, Department of Physics, Department of Chemistry and Biochemistry, Kent State University, Stony Brook Univ, Ohio Univ, Institute for Advanced Simulation, Institut fur Kernphysik, and Julich Center, Bowling Green State University, Dept. of Physics, Hiram College, Ohio State Univ - Columbus, Kent State University, Psychology Dept, Cleveland State University, Physics Dept, Cleveland State University, Chemical Physics Interdisciplinary Program and Liquid Crystal Institute, Kent State University, Kent, OH 44242-0001, USA, Univ of Konstanz, Univ College London, NIST, Hiroshima Univ, KIT, Missouri University of Science and Technology, University of California, San Diego, Georgia Institute of Technology, KSU, SKKU, Lock Haven Univ, Massachusetts General Hospital, University of Science and Technology of China, Yale University, Shanghai Institute of Microsystem and Information Technology, CAS, Nanjing University, Liquid Crystal Institute and Chemical Physics Interdisciplinary Program, Kent State University, Kent, OH 44242, USA, Department of Physics, Kent State University, Kent OH 44242, Department of Electro-Optic Engineering Ilse Katz Institute for Nanoscale Science and Technology Ben Gurion University, Beer Sheva 84105, Israel, Ohio University Zanesville