Observation of molecular rings formed from DNA deposited on Au(111)

ORAL

Abstract

Beside its biological functions, DNA has been used as a building block for biological sensors and a template for electronic nanostructures. These applications require a deep understanding of how DNA molecules organize on particular surfaces as well as the electronic properties of an individual DNA molecule. Using scanning tunneling microscopy (STM) and atomic force microscopy (AFM), we have successfully characterized DNA deposited on Au(111), of various strand lengths and sequences. Here we report the observation of ring-like structures formed on the Au(111) surface by adsorption of 45 bp long, double stranded DNA. To understand the nature of these structures, deposition parameters such as DNA concentration, exposure time, and buffer solution were varied. In an attempt to gain more insight into the structures, a computer model was constructed based on electrostatic interaction between the DNA molecules. This model provides additional information about the composition and formation mechanisms of the ring structures.

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Authors

  • Pengshun Luo

    Department of Physics, North Carolina State University, North Carolina State University

  • Jaetae Seo

    NC A\&T State University, Penn State University, The Ohio State University, Wright State University, AFRL/RYHC Hanscom AFB MA 01731, Harvard University, The College of William \& Mary, NCSU Near-field Optics Lab, University of North Carolina at Chapel Hill, Weizmann, PTB, Braunschweig, UMass, TUNL/Duke, UConn, UConn/TUNL, University of North Carolina, Chapel Hill, North Carolina State University, Brimrose Corporation of America, Hampton University, Elizabeth City State University, Department of Physics, Florida A\&M University, Tallahassee, Florida-32307, Department of Physics, University of Rajshahi, Rajshahi-6205, Bangladesh, Department of Physics, University of Rajshahi, Rajshah-6205, Bangladesh, Department of Physics, University of Rajshahi, Rajshahi-6250, Bangladesh, Department of Physics, University of Rajshahi-6205, Bangladesh, Alabama A\&M University, Fachbereich C-Mathematik und Naturwissen-Schaften, Bergische Universitat Wuppertal, D-42097, Wuppertal, Germany, NC State University, College of William and Mary, Department of Physics, N.C. State Univeristy, Research Triangle Institute, NCSU Physics, Pennsylvania State University, Tsinghua University, Lawrence Berkeley National Laboratory, Vanderbilt University, LSU, UNIRIB, U. Tenn., ORNL, Miss. St., University of North Carolina at Chapel Hill and Triangle Universities Nuclear Laboratory, NCA\&T, Duke, NCCU, UNC-Chapel Hill, Department of Physics, North Carolina State University, Department of Chemistry, North Carolina State University, Department of Physics and Astronomy, University of North Carolina, Chapel Hill, Department of Physics and Astronomy, University of North Carolina at Chapel Hill, Department of Pathology and Laboratory Medicine, University of North Carolina at Chapel Hil, North Carolina School of Science and Mathematics, Department of Physics, Elon University, Dept. of Physics - UNC - Chapel Hill, Nanyang Technological University, School of Materials Sciences and Engineering, Singapore, Department of Physics and Astronomy, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599-3255, USA, Argonne National Laboratory, Department of Physics, Hampton University, Hampton, VA 23668, Korea Research Institute of Standards and Science, Daejeon, 305-600, South Korea, Department of Chemistry, Gyeongsang National University, Jinju 660-701, South Korea, Electronics and Telecommunications Research Institute, Daejeon, 305-700, South Korea, Department of Chemistry and Biochemistry, Worcester Polytechnic Institute, Worcester, MA 01609

  • Jaetae Seo

    NC A\&T State University, Penn State University, The Ohio State University, Wright State University, AFRL/RYHC Hanscom AFB MA 01731, Harvard University, The College of William \& Mary, NCSU Near-field Optics Lab, University of North Carolina at Chapel Hill, Weizmann, PTB, Braunschweig, UMass, TUNL/Duke, UConn, UConn/TUNL, University of North Carolina, Chapel Hill, North Carolina State University, Brimrose Corporation of America, Hampton University, Elizabeth City State University, Department of Physics, Florida A\&M University, Tallahassee, Florida-32307, Department of Physics, University of Rajshahi, Rajshahi-6205, Bangladesh, Department of Physics, University of Rajshahi, Rajshah-6205, Bangladesh, Department of Physics, University of Rajshahi, Rajshahi-6250, Bangladesh, Department of Physics, University of Rajshahi-6205, Bangladesh, Alabama A\&M University, Fachbereich C-Mathematik und Naturwissen-Schaften, Bergische Universitat Wuppertal, D-42097, Wuppertal, Germany, NC State University, College of William and Mary, Department of Physics, N.C. State Univeristy, Research Triangle Institute, NCSU Physics, Pennsylvania State University, Tsinghua University, Lawrence Berkeley National Laboratory, Vanderbilt University, LSU, UNIRIB, U. Tenn., ORNL, Miss. St., University of North Carolina at Chapel Hill and Triangle Universities Nuclear Laboratory, NCA\&T, Duke, NCCU, UNC-Chapel Hill, Department of Physics, North Carolina State University, Department of Chemistry, North Carolina State University, Department of Physics and Astronomy, University of North Carolina, Chapel Hill, Department of Physics and Astronomy, University of North Carolina at Chapel Hill, Department of Pathology and Laboratory Medicine, University of North Carolina at Chapel Hil, North Carolina School of Science and Mathematics, Department of Physics, Elon University, Dept. of Physics - UNC - Chapel Hill, Nanyang Technological University, School of Materials Sciences and Engineering, Singapore, Department of Physics and Astronomy, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599-3255, USA, Argonne National Laboratory, Department of Physics, Hampton University, Hampton, VA 23668, Korea Research Institute of Standards and Science, Daejeon, 305-600, South Korea, Department of Chemistry, Gyeongsang National University, Jinju 660-701, South Korea, Electronics and Telecommunications Research Institute, Daejeon, 305-700, South Korea, Department of Chemistry and Biochemistry, Worcester Polytechnic Institute, Worcester, MA 01609

  • Jaetae Seo

    NC A\&T State University, Penn State University, The Ohio State University, Wright State University, AFRL/RYHC Hanscom AFB MA 01731, Harvard University, The College of William \& Mary, NCSU Near-field Optics Lab, University of North Carolina at Chapel Hill, Weizmann, PTB, Braunschweig, UMass, TUNL/Duke, UConn, UConn/TUNL, University of North Carolina, Chapel Hill, North Carolina State University, Brimrose Corporation of America, Hampton University, Elizabeth City State University, Department of Physics, Florida A\&M University, Tallahassee, Florida-32307, Department of Physics, University of Rajshahi, Rajshahi-6205, Bangladesh, Department of Physics, University of Rajshahi, Rajshah-6205, Bangladesh, Department of Physics, University of Rajshahi, Rajshahi-6250, Bangladesh, Department of Physics, University of Rajshahi-6205, Bangladesh, Alabama A\&M University, Fachbereich C-Mathematik und Naturwissen-Schaften, Bergische Universitat Wuppertal, D-42097, Wuppertal, Germany, NC State University, College of William and Mary, Department of Physics, N.C. State Univeristy, Research Triangle Institute, NCSU Physics, Pennsylvania State University, Tsinghua University, Lawrence Berkeley National Laboratory, Vanderbilt University, LSU, UNIRIB, U. Tenn., ORNL, Miss. St., University of North Carolina at Chapel Hill and Triangle Universities Nuclear Laboratory, NCA\&T, Duke, NCCU, UNC-Chapel Hill, Department of Physics, North Carolina State University, Department of Chemistry, North Carolina State University, Department of Physics and Astronomy, University of North Carolina, Chapel Hill, Department of Physics and Astronomy, University of North Carolina at Chapel Hill, Department of Pathology and Laboratory Medicine, University of North Carolina at Chapel Hil, North Carolina School of Science and Mathematics, Department of Physics, Elon University, Dept. of Physics - UNC - Chapel Hill, Nanyang Technological University, School of Materials Sciences and Engineering, Singapore, Department of Physics and Astronomy, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599-3255, USA, Argonne National Laboratory, Department of Physics, Hampton University, Hampton, VA 23668, Korea Research Institute of Standards and Science, Daejeon, 305-600, South Korea, Department of Chemistry, Gyeongsang National University, Jinju 660-701, South Korea, Electronics and Telecommunications Research Institute, Daejeon, 305-700, South Korea, Department of Chemistry and Biochemistry, Worcester Polytechnic Institute, Worcester, MA 01609