Complex Networks: Biology to Machines

Presentations

• Deep Learning and Statistical longitudinal medication studies of attention-deficit/hyperactivity disorder of (ADHD) participants

  ORAL

  March 18, 2025, 11:30 AM – March 18, 2025, 11:42 AM

  Publication: none yet

  Presenters

  • Chaundy Lee McKeever

    • Indiana University Bloomington

  Authors

  • Jorge V Jose

    • Indiana University Bloomington

  • Khoshrav Doctor

    • Indiana University Bloomington

  • Chaundy Lee McKeever

    • Indiana University Bloomington

  View abstract →

• A cell-level protein aggregation model reveals the main molecular mechanisms in neurodegenerative diseases

  ORAL

  March 18, 2025, 11:42 AM – March 18, 2025, 11:54 AM

  Publication: "A cell-level protein aggregation model to predict neurodegenerative disease phenomena" in preparation
  "Quantifying the rates of cell-autonomous and cell-to-cell tau aggregation in PSP" in preparation
  

  Presenters

  • Shih-Huan Huang

    • Department of Chemistry, University of Cambridge

  Authors

  • Shih-Huan Huang

    • Department of Chemistry, University of Cambridge

  • Georg Meisl

    • Department of Chemistry, University of Cambridge

  • Tanrada Pansuwan

    • Department of Clinical Neuroscience, University of Cambridge

  • Annelies Quaegebeur

    • Department of Clinical Neuroscience, University of Cambridge

  • Timothy Rittman

    • Department of Clinical Neuroscience, University of Cambridge

  • Tuomas Knowles

    • Department of Chemistry, University of Cambridge

  • James B Rowe

    • Department of Clinical Neuroscience, University of Cambridge
    • Department of Clinical Neuroscience, Univesity of Cambridge

  • David Klenerman

    • Department of Chemistry, University of Cambridge

  View abstract →

• Neural gain amplification and mode-mixing lead to cortico-hippocampal state-transitions

  ORAL

  March 18, 2025, 11:54 AM – March 18, 2025, 12:06 PM

  Presenters

  • Richa Phogat

    • The University of Newcastle
    • University of Newcastle

  Authors

  • Richa Phogat

    • The University of Newcastle
    • University of Newcastle

  • Anna Behler

    • The University of Newcastle
    • The University of Newcastle, Australia

  • Saurabh Sonkusare

    • The University of Newcastle
    • The University of Newcastle, Australia

  • James Pang

    • Monash University, Australia

  • Nikitas Koussis

    • The University of Newcastle, Australia

  • James Roberts

    • QIMR Berghofer Medical Research Institute, Australia

  • Jordan DeKraker

    • McGill University, Canada

  • Alex Fornito

    • Monash University, Australia

  • Peter Alexander Robinson

    • University of Sydney

  • Michael Breakspear

    • The University of Newcastle, Australia

  View abstract →

• bioRNNS: toward more biologically plausible neural network models of brain dynamics

  ORAL

  March 18, 2025, 12:06 PM – March 18, 2025, 12:18 PM

  Presenters

  • Ahmad Beyh

    • Rutgers University

  Authors

  • Ahmad Beyh

    • Rutgers University

  • Jason Z Kim

    • Cornell University

  • Linden Parkes

    • Rutgers University

  View abstract →

• Inferring minimax entropy models from neural responses to natural movies

  ORAL

  March 18, 2025, 12:18 PM – March 18, 2025, 12:30 PM

  Presenters

  • Eliza Z Blodget

    • University of Chicago

  Authors

  • Eliza Z Blodget

    • University of Chicago

  • Christopher W Lynn

    • Yale University

  • Stephanie E Palmer

    • University of Chicago

  View abstract →

• Inferring biological processes with intrinsic noise from cross-sectional data

  ORAL

  March 18, 2025, 12:30 PM – March 18, 2025, 12:42 PM

  Publication: https://arxiv.org/html/2410.07501v1

  Presenters

  • Suryanarayana Maddu

    • Flatiron Institute

  Authors

  • Suryanarayana Maddu

    • Flatiron Institute

  • Victor Chardès

    • Flatiron Institute

  • Michael J Shelley

    • Flatiron Institute (Simons Foundation)

  View abstract →

• Abstract Withdrawn

  ORAL · Withdrawn

  March 18, 2025, 12:42 PM – March 18, 2025, 12:54 PM

  View abstract →

• Coarse-graining, scale invariance, and emergence of summarization in narratives

  ORAL

  March 18, 2025, 12:54 PM – March 18, 2025, 1:06 PM

  Presenters

  • Weishun Zhong

    • Institute for Advanced Study

  Authors

  • Weishun Zhong

    • Institute for Advanced Study

  • Tankut Can

    • Emory University and Institue for Advanced Study

  • Mikhail Katkov

    • Weizmann Institute of Science and Institute for Advanced Study

  • Ilya Shnayderman

    • Weizmann Institute of Science

  • Antonios Georgiou

    • Institute for Advanced Study

  • Misha Tsodyks

    • Weizmann Institute of Science and Institute for Advanced Study

  View abstract →

• A biocomputing paradigm for zero-shot adaptation and learning in neural networks

  ORAL

  March 18, 2025, 1:06 PM – March 18, 2025, 1:18 PM

  Presenters

  • Wolfgang Losert

    • University of Maryland College Park

  Authors

  • Wolfgang Losert

    • University of Maryland College Park

  • Hoony Kang

    • University of Maryland, College Park

  View abstract →

• Phase Space Engineering of Digital Memcomputing Machines

  ORAL

  March 18, 2025, 1:18 PM – March 18, 2025, 1:30 PM

  Publication: C. Sipling, Y.-H. Zhang, M. Di Ventra. Phase Space Engineering of Digital Memcomputing Machines. In preparation.

  Presenters

  • Chesson Sipling

    • University of California, San Diego

  Authors

  • Chesson Sipling

    • University of California, San Diego

  • Yuan-Hang Zhang

    • University of California, San Diego

  • Massimiliano Di Ventra

    • University of California, San Diego

  View abstract →

• Out-of-equilibrium molecular computing for efficient solutions to NP-hard graph problems

  ORAL

  March 18, 2025, 1:30 PM – March 18, 2025, 1:42 PM

  Presenters

  • Qian-Ze Zhu

    • Harvard University

  Authors

  • Qian-Ze Zhu

    • Harvard University

  • Francesco Mottes

    • Harvard University

  • Erin Crawley

    • Harvard University

  • Michael P Brenner

    • Harvard University
    • Harvard University/Google Research

  View abstract →

• Random matrix theory-guided denoising of single-cell RNA-seq data

  ORAL

  March 18, 2025, 1:42 PM – March 18, 2025, 1:54 PM

  Presenters

  • Victor Chardès

    • Flatiron Institute

  Authors

  • Victor Chardès

    • Flatiron Institute

  View abstract →

• Phase chimera states: frozen patterns of disorder

  ORAL

  March 18, 2025, 1:54 PM – March 18, 2025, 2:06 PM

  Publication: Phase chimera states: frozen patterns of disorder
  ER Zajdela, DM Abrams - arXiv preprint arXiv:2308.06190, 2023

  Presenters

  • Emma Rosa Zajdela

    • Princeton University

  Authors

  • Emma Rosa Zajdela

    • Princeton University

  • Daniel M Abrams

    • Northwestern University

  View abstract →

• Bulk-Boundary Correspondence in Ergodic and Nonergodic One-Dimensional Stochastic Processe

  ORAL

  March 18, 2025, 2:06 PM – March 18, 2025, 2:18 PM

  Publication: Taro Sawada, Kazuki Sone, Kazuki Yokomizo, Yuto Ashida, Takahiro Sagawa, arXiv:2405.00458

  Presenters

  • Taro Sawada

    • Univ of Tokyo

  Authors

  • Taro Sawada

    • Univ of Tokyo

  • Kazuki Sone

    • Univ of Tsukuba

  • Kazuki Yokomizo

    • Univ of Tokyo

  • Yuto Ashida

    • Univ of Tokyo

  • Takahiro Sagawa

    • Univ of Tokyo
    • University of Tokyo
    • The University of Tokyo
    • Department of Applied Physics, The University of Tokyo

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• Mechanical diffusion models

  ORAL

  March 18, 2025, 2:18 PM – March 18, 2025, 2:30 PM

  Presenters

  • Cyrill Bösch

    • Princeton University

  Authors

  • Cyrill Bösch

    • Princeton University

  • Geoffrey Roeder

    • Princeton University

  • Marc Serra-Garcia

    • AMOLF

  • Ryan P Adams

    • Princeton University

  View abstract →