Detection of diffusion anisotropy from an individual short particle trajectory

POSTER

Abstract

In parallel with advances in microscale imaging techniques, the fields of biology and materials science have focused on precisely extracting particle properties based on their diffusion behavior. Although the majority of real-world particles exhibit anisotropy, their behavior has been studied less than that of isotropic particles. In this study, we introduce a method for estimating the diffusion coefficients of individual anisotropic particles using short-trajectory data on the basis of a maximum likelihood framework. Traditional estimation techniques often use mean-squared displacement (MSD) values or other statistical measures that inherently remove angular information. Instead, we treated the angle as a latent variable and used belief propagation to estimate it while maximizing the likelihood using the expectation-maximization algorithm. Compared to conventional methods, this approach facilitates better estimation of shorter trajectories and faster rotations, as confirmed by numerical simulations and experimental data involving bacteria and quantum rods. Additionally, we performed an analytical investigation of the limits of detectability of anisotropy and provided guidelines for the experimental design. In addition to serving as a powerful tool for analyzing complex systems, the proposed method will pave the way for applying maximum likelihood methods to more complex diffusion phenomena.

*This work was supported by the Japan Society for the Promotion of Science (JSPS) KAKENHI Grant-in-Aid for Scientific Research on Innovative Areas, "Information Physics of Living Matters" (Grants No. JP19H05794 and No. JP19H05795) to Y.O. and Grant-in-Aid for Transformative Research Areas (A), "Foundation of Machine Learning Physics" (Grant No. JP22H05117) to Y.K., and by the Japan Science and Technology Agency (JST) Grants No. JPMJCR20E2 and No. JPMJMS2025-14 to Y.O., Grants No. JPMJCR20E5 and No. JPMJMS2022-14 to M.K., and Grant No. JPMJCR1912 to Y.K

Publication: Takanami, K., Taniguchi, D., Kuroda, M., Enoki, S., Okada, Y., & Kabashima, Y. (2024). Detection of diffusion anisotropy from an individual short particle trajectory. Physical Review Research, 6(3), 033272. https://doi.org/10.1103/PhysRevResearch.6.033272

Presenters

  • Kaito Takanami

    • The University of Tokyo

Authors

  • Kaito Takanami

    • The University of Tokyo
  • Daisuke Taniguchi

    • The University of Tokyo
  • Masafumi Kuroda

    • The University of Tokyo
  • Sawako Enoki

    • The university of Tokyo
  • Yasushi Okada

    • The University of Tokyo, RIKEN Center for Biosystems Dynamics Research
  • Yoshiyuki Kabashima

    • The University of Tokyo