Genome Organization and Subnuclear Phenomena I: Physical Models and Principles

Presentations

• Three pieces in genome organization

  ORAL · Invited

  March 19, 2025, 3:00 PM – March 19, 2025, 3:36 PM

  Presenters

  • Michele Pierro

    • Northeastern University

  Authors

  • Michele Pierro

    • Northeastern University

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• Abstract Withdrawn

  ORAL · Withdrawn

  March 19, 2025, 3:36 PM – March 19, 2025, 3:48 PM

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• Overlap reduction, entanglement dilution, and anomalous dynamics of active polymer melts regulated by active loop extrusion

  ORAL

  March 19, 2025, 3:48 PM – March 19, 2025, 4:00 PM

  Presenters

  • Brian Chan

    • Duke University

  Authors

  • Brian Chan

    • Duke University

  • Michael Rubinstein

    • Duke University

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• Investigation of the Histone Code using de novo Epigenetic Knockouts

  ORAL

  March 19, 2025, 4:00 PM – March 19, 2025, 4:12 PM

  Presenters

  • Soren Christopher Kyhl

    • University of Chicago

  Authors

  • Soren Christopher Kyhl

    • University of Chicago

  • Juan J De Pablo

    • University of Chicago

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• Abstract Withdrawn

  ORAL · Withdrawn

  March 19, 2025, 4:12 PM – March 19, 2025, 4:24 PM

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• Characterization of solid-like motion in an active polymer model for chromatin

  ORAL

  March 19, 2025, 4:24 PM – March 19, 2025, 4:36 PM

  Presenters

  • Sucheol Shin

    • University of Texas at Austin

  Authors

  • Sucheol Shin

    • University of Texas at Austin

  • Guang Shi

    • University of Texas at Austin
    • The University of Texas at Austin

  • Dave Thirumalai

    • University of Texas at Austin
    • UT Austin

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• Abstract Withdrawn

  ORAL · Withdrawn

  March 19, 2025, 4:36 PM – March 19, 2025, 4:48 PM

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• Compaction-mediated segregation of partly replicated bacterial chromosome

  ORAL

  March 19, 2025, 4:48 PM – March 19, 2025, 5:00 PM

  Presenters

  • Sumitabha Brahmachari

    • Rice University

  Authors

  • Sumitabha Brahmachari

    • Rice University

  • Antonio Oliveira Junior

    • Rice University

  • Vinicius Contessoto

    • Rice University

  • Matheus F Mello

    • Rice University

  • Jose N Onuchic

    • Rice University

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• Double helical chromosomes: a "loops on a ring" polymeric model

  ORAL

  March 19, 2025, 5:00 PM – March 19, 2025, 5:12 PM

  Presenters

  • Luyang Li

    • University of Minnesota

  Authors

  • Luyang Li

    • University of Minnesota

  • Sabin Adhikari

    • University of Minnesota

  • Kevin D Dorfman

    • University of Minnesota

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• Chromosome-dependent transcription and cell width confinement drive nucleoid segregation and couple it to cell growth in the rod-shaped Escherichia coli.

  ORAL

  March 19, 2025, 5:12 PM – March 19, 2025, 5:24 PM

  Presenters

  • Alexandros Papagiannakis

    • Department of Biology, Stanford University, Stanford, CA 94305, USA

  Authors

  • Alexandros Papagiannakis

    • Department of Biology, Stanford University, Stanford, CA 94305, USA

  • Qiwei Yu

    • Princeton University
    • Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton NJ 08544, USA

  • Sander K Govers

    • Howard Hughes Medical Institute, Stanford University, Stanford, CA 94305, USA

  • Wei-Hsiang Lin

    • Howard Hughes Medical Institute, Stanford University, Stanford, CA 94305, USA

  • Ned S Wingreen

    • Princeton University
    • Department of Molecular Biology, Princeton University, Princeton NJ 08544, USA

  • Christine Jacobs-Wagner

    • Department of Microbiology and Immunology, School of Medicine, Stanford, CA 94305, USA

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• Chromatin Compartmentalization can Emerge from Crosslinks, Motors, and Nuclear Deformability

  ORAL

  March 19, 2025, 5:24 PM – March 19, 2025, 5:36 PM

  Presenters

  • Ligesh Theeyancheri

    • Syracuse University

  Authors

  • Ligesh Theeyancheri

    • Syracuse University

  • Edward J Banigan

    • Massachusetts Institute of Technology

  • Jennifer M Schwarz

    • Syracuse University
    • Department of Physics, Syracuse University

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• Protein search processes mediated by chromatin topology

  ORAL

  March 19, 2025, 5:36 PM – March 19, 2025, 5:48 PM

  Publication: Protein search processes mediated by chromatin topology
  Shuvadip Dutta, R. Adarshkrishnan, Ranjith Padinhateeri, Mithun K. Mitra
  bioRxiv 2023.12.12.571394; doi: https://doi.org/10.1101/2023.12.12.571394

  Presenters

  • Shuvadip Dutta

    • Department of Physics, Indian Institute of Technology Bombay, Mumbai 400076, India

  Authors

  • Shuvadip Dutta

    • Department of Physics, Indian Institute of Technology Bombay, Mumbai 400076, India

  • Adarshkrishnan R.

    • Department of Physics, Indian Institute of Technology Bombay, Mumbai 400076, India

  • Ranjith Padinhateeri

    • Department of Biosciences and Bioengineering, Indian Institute of Technology Bombay, Mumbai 400076, India

  • Mithun K Mitra

    • Department of Physics, Indian Institute of Technology Bombay, Mumbai 400076, India

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• A minimal model for the role of Rim4-mRNA aggregates in regulating meiotic exit in budding yeast

  ORAL

  March 19, 2025, 5:48 PM – March 19, 2025, 6:00 PM

  Presenters

  • Viridiana Abigail Marquez Davila

    • Indiana University Bloomington

  Authors

  • Viridiana Abigail Marquez Davila

    • Indiana University Bloomington

  • Sima Setayeshgar

    • Indiana University, Bloomington
    • Indiana University Bloomington

  • Renyu Wang

    • Peking Univ

  • Soni Lacefield

    • Geisel School of Medicine at Dartmouth

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