RNA and Protein: A Match made in the Hadean

ORAL  · Invited

Abstract

Life is diverse, but core biochemistry is not. Despite the immense organismal variety of the Tree of Life—tigers and butterflies, thermophiles and metal-respiring microbes—fundamental biochemistry and biophysics have remained nearly unchanged for ~4 billion years. All life employs the same polypeptide and ribose–phosphate backbones, the same limited monomer sets, the same ribosome, genetic code, and essential metal ions. Fundamental physical-chemical principles unite all biochemistry: all polymer synthesis occurs exclusively through dehydration condensation, bioenergetics depends on water as a nucleophile, biopolymers organization arises largely from the hydrophobic effect, all universal biopolymers fold and assemble and by so doing resist hydrolysis.

Understanding this conservatism requires distinguishing which biochemical features are physically constrained, which are thermodynamically inevitable, and which are historically contingent. I will present our recent results on the origins and evolution of the translation system and on experimental chemical evolution, discussing the essential physical and chemical properties of polynucleotides and polypeptides. Our guiding principle is that biochemistry and biophysics are understood most clearly in light of evolution.

*This work is supported by NASA (80NSSC24K0344 and 80NSSC23K1564)

Publication: Matange K, Marland E, Frenkel-Pinter M, & Williams LD (2025) Biological polymers: Evolution, function, and significance. Acc Chem Res.
Frenkel-Pinter M, Rajaei V, Glass JB, Hud NV, & Williams LD (2021) Water and life: The medium is the message. J Mol Evol 1-10.
Bowman JC, Petrov AS, Frenkel-Pinter M, Penev PI, & Williams LD (2020) Root of the tree: The significance, evolution, and origins of the ribosome. Chem Rev 120: 4848-4878.
Runnels CM, Lanier KA, Williams JK, Bowman JC, Petrov AS, Hud NV, & Williams LD (2018) Folding, assembly, and persistence: The essential nature and origins of biopolymers. J Mol Evol 86: 598-610.
Bernier CR, Petrov AS, Kovacs NA, Penev PI, & Williams LD (2018) Translation: The universal structural core of life. Mol Biol Evol 35: 2065-2076.
Lanier KA, Petrov AS, & Williams LD (2017) The central symbiosis of molecular biology: Molecules in mutualism. J Mol Evol 85: 8-13.
Kovacs NA, Petrov AS, Lanier KA, & Williams LD (2017) Frozen in time: The history of proteins. Mol Biol Evol 34: 1252-1260.
Petrov AS, Gulen B, Norris AM, Kovacs NA, Bernier CR, Lanier KA, Fox GE, Harvey SC, Wartell RM, Hud NV, & Williams LD (2015) History of the ribosome and the origin of translation. Proc Natl Acad Sci USA 112: 15396-15401.
Petrov AS, Bernier CR, Hsiao C, Norris AM, Kovacs NA, Waterbury CC, Stepanov VG, Harvey SC, Fox GE, Wartell RM, Hud NV, & Williams LD (2014) Evolution of the ribosome at atomic resolution. Proc Natl Acad Sci USA 111: 10251-10256.
Hsiao C, Mohan S, Kalahar BK, & Williams LD (2009) Peeling the onion: Ribosomes are ancient molecular fossils. Mol Biol Evol 26: 2415-2425.

Presenters

  • Loren D Williams

    • Georgia Tech

Authors

  • Loren D Williams

    • Georgia Tech