Physics of Proteins II: Structure, Dynamics, & Evolution

Presentations

• Dynamics of mechanism of a dual function of DNA repair and signal transduction by CraCRY protein

  ORAL · Invited

  March 16, 2026, 3:30 PM – March 16, 2026, 4:06 PM

  Publication: L. Yan, X. Cao, L. Wang, J. Chen, A. Sancar and D. Zhong, PNAS 121, e2417633121 (2024). Dynamics and mechanism of DNA repair by a bifunctional cryptochrome.

  Presenters

  • Dongping Zhong

    • Shanghai Jiao Tong University

  Authors

  • Dongping Zhong

    • Shanghai Jiao Tong University

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• The Characterization of Evolved mMaple3 Fluorescent Proteins

  ORAL

  March 16, 2026, 4:06 PM – March 16, 2026, 4:18 PM

  Presenters

  • Miles S Powell

    • Stony Brook University

  Authors

  • Miles S Powell

    • Stony Brook University

  • Alison Tebo

    • Howard Hughes Medical Institute (HHMI)

  • Ryan Woloschuk

    • Howard Hughes Medical Institute (HHMI)

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• The Picosecond Dance of a Single Water Molecule at the Protein's Surface

  ORAL

  March 16, 2026, 4:18 PM – March 16, 2026, 4:30 PM

  Publication: 1. Juan Zhao, Pengyun Yu, Tiantian Dong, Yanzhou Wu, Fan Yang, and Jianping Wang, Commun. Chem. 2024, 7, 82.

  Presenters

  • Jianping Wang

    • Chinese Academy of Sciences

  Authors

  • Jianping Wang

    • Chinese Academy of Sciences

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• Toward a chemically transferable coarse-grained model of protein-based materials learned from tripeptide fragments

  ORAL

  March 16, 2026, 4:30 PM – March 16, 2026, 4:42 PM

  Presenters

  • Tariq Shereef

    • Colorado School of Mines

  Authors

  • Tariq Shereef

    • Colorado School of Mines

  • Alexander J Pak

    • Colorado School of Mines

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• Brownian translocation and protein conformational dynamics of a mitochondrial RNA polymerase along DNA

  ORAL

  March 16, 2026, 4:42 PM – March 16, 2026, 4:54 PM

  Publication: Shannon J. McElhenney, and Jin Yu. Collective Variables and Facilitated Conformational Opening during Translocation of Human Mitochondrial RNA Polymerase (POLRMT) from Atomic Simulations. J. Chem. Theory Comput. 2025, 21, 9, 4815–4829

  Presenters

  • Jin Yu

    • University of California, Irvine

  Authors

  • Shannon Jay McElhenney

    • University of California, Irvine

  • Jin Yu

    • University of California, Irvine

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• Using resurrected ancestral proteins to map function along diverging evolutionary pathways

  ORAL

  March 16, 2026, 4:54 PM – March 16, 2026, 5:06 PM

  Presenters

  • Wouter D Hoff

    • Oklahoma State University-Stillwater

  Authors

  • Rosalie Dohmen

    • Oklahoma State University

  • Gunnar D Hoogerwerf

    • Oklahoma State University

  • Aihua Xie

    • Oklahoma State University-Stillwater

  • Wouter D Hoff

    • Oklahoma State University-Stillwater

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• Nucleotide-dependent dynamics of KIF-14 conserved structural domains in kinesin

  ORAL

  March 16, 2026, 5:06 PM – March 16, 2026, 5:18 PM

  Presenters

  • Saul A Hernandez

    • New Mexico State University

  Authors

  • Saul A Hernandez

    • New Mexico State University

  • Susan R Atlas

    • University of New Mexico

  • Aung Z Htut

    • University of New Mexico

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• Influence of Hydrophobic Mismatch on pHILIP Insertion Dynamics

  ORAL

  March 16, 2026, 5:18 PM – March 16, 2026, 5:30 PM

  Presenters

  • Ganga P Sharma

    • Fairmont State University

  Authors

  • Ganga P Sharma

    • Fairmont State University

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• Understanding structure-function relationships in allosteric systems beyond the linear regime

  ORAL

  March 16, 2026, 5:30 PM – March 16, 2026, 5:42 PM

  Presenters

  • Stephen Thornton

    • Cornell University
    • University of California, Los Angeles

  Authors

  • Stephen Thornton

    • Cornell University
    • University of California, Los Angeles

  • Felipe Martins

    • University of Pennsylvania

  • Marcelo Guzmán

    • University of Pennsylvania

  • Andrea Jo-Wei Liu

    • University of Pennsylvania

  • Shenshen Wang

    • University of California, Los Angeles

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• Uncovering Key Springs in Elastic Networks: Insights from Global Epistasis and from Hessian Analyses

  ORAL

  March 16, 2026, 5:42 PM – March 16, 2026, 5:54 PM

  Presenters

  • Farshid Mohammad-Rafiee

    • University of Pennsylvania

  Authors

  • Farshid Mohammad-Rafiee

    • University of Pennsylvania

  • Felipe Martins

    • University of Pennsylvania

  • Joshua B Plotkin

    • University of Pennsylvania

  • Andrea Jo-Wei Liu

    • University of Pennsylvania

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