Physisorption and Chemisorption of DNA nucleobases on Single-Layer Ti<sub>3</sub>C<sub>2</sub> MXene and Graphene: DFT and NEGF Studies

ORAL

Abstract

We investigated the interaction of DNA nucleobases [adenine (A), guanine (G), thymine (T), and cytosine (C)] with single-layer Ti3C2 MXene using vdW-corrected DFT and NEGF methods. All calculations were benchmarked against graphene. We showed that depending on the initial vertical height of a nucleobase above the Ti3C2 surface, two interaction mechanisms are possible, namely: physisorption and chemisorption. For graphene, DNA nucleobases always physisorped onto the graphene surface irrespective of the initial vertical height of nucleobase above graphene sheet. The PBE+vdW binding energies for graphene are high (0.55 – 0.74 eV) and follow the order G > A > T > C, with adsorption heights in the range 3.16 – 3.22 Å, indicating strong physisorption. For Ti3C2, the PBE+vdW binding energies are relatively weaker (0.16 – 0.20 eV) and follow the order A > G = T > C, with adsorption heights in the range 5.51 – 5.60 Å indicating weak physisorption. The binding energies for chemisorption follow the order G > A >T > C, which is the same order for physisorption. The binding energy values (5.3 – 7.5 eV) indicate very strong chemisorption (~40 times larger than the physisorption binding energies). Furthermore, our band structure and electronic transport analysis showed that for physisorption, there are neither significant variation in band structure nor modulations in the transmission function and device density of states (DDOS). The relatively weak physisorption and strong chemisorption shows that Ti3C2 might not be capable of identifying DNA nucleobases using the physisorption method.

*B. O. Tayo and M. A. Walkup were supported by the National Institute of General Medical Sciences (NIGMS) of the National Institutes of Health, under Award No. 1R15GM140445-01A1. S. Caliskan was supported by the UHCL with FRSF, through Award No. A06S22.

Publication: Benjamin O. Tayo, Michael A. Walkup (student), and Serkan Caliskan, "Adsorption of DNA nucleobases on single-layer Ti3C2 MXene and graphene: vdW-corrected DFT and NEGF studies", AIP Advances, 13, 085213, August 2023

Presenters

  • Benjamin O Tayo

    • University of Central Oklahoma

Authors

  • Benjamin O Tayo

    • University of Central Oklahoma
  • Michael Walkup

    • University of Central Oklahoma
  • Serkan Caliskan

    • University of Houston-Clear Lake