Inference, Information, and Learning in Biophysics II

Presentations

• Reconstructing biological dictionaries: How does neural code translate into behavior?

  ORAL

  March 5, 2019, 2:30 PM – March 5, 2019, 2:42 PM

  Presenters

  • Ilya Nemenman

    Emory University, Physics, Emory University

  Authors

  • Damian Hernandez

    Physics, Emory University, Centro Atómico Bariloche

  • Samuel Sober

    Emory University

  • Ilya Nemenman

    Emory University, Physics, Emory University

  View abstract →

• Learning to Crawl

  ORAL

  March 5, 2019, 2:42 PM – March 5, 2019, 2:54 PM

  Presenters

  • Shruti Mishra

    Harvard University

  Authors

  • Shruti Mishra

    Harvard University

  • Willem Marinus Van Rees

    Massachusetts Institute of Technology, Mechanical Engineering, Massachusetts Institute of Technology

  • Lakshminarayanan Mahadevan

    Department of Physics, Harvard University, Harvard University, John A. Paulson School of Engineering and Applied Sciences, Harvard University, SEAS, Physics, OEB, Harvard University

  View abstract →

• Non-Gaussian Bayesian theory of sensorimotor learning with multiple timescales

  ORAL

  March 5, 2019, 2:54 PM – March 5, 2019, 3:06 PM

  Presenters

  • Baohua Zhou

    Emory University

  Authors

  • Baohua Zhou

    Emory University

  • David Hofmann

    Emory University

  • Samuel Sober

    Emory University

  • Ilya Nemenman

    Emory University, Physics, Emory University

  View abstract →

• Structure from noise: Mental errors yield abstract representations of events

  ORAL

  March 5, 2019, 3:06 PM – March 5, 2019, 3:18 PM

  Presenters

  • Christopher Lynn

    University of Pennsylvania

  Authors

  • Christopher Lynn

    University of Pennsylvania

  • Ari E Kahn

    University of Pennsylvania

  • Danielle Bassett

    University of Pennsylvania

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• Can vocalizations predict mating pairs in a society of songbirds? A maximum-entropy Ising model approach

  ORAL

  March 5, 2019, 3:18 PM – March 5, 2019, 3:30 PM

  Presenters

  • Eve Armstrong

    University of Pennsylvania

  Authors

  • Eve Armstrong

    University of Pennsylvania

  • Clelia de Mulatier

    University of Pennsylvania

  • David White

    Wilfred Laurier University

  • Marc Schmidt

    University of Pennsylvania

  • Vijay Balasubramanian

    Physics, University of Pennsylvania, Philadelphia, PA, USA, University of Pennsylvania

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• Analytical corrections to entropy for under-sampled discrete distributions.

  ORAL

  March 5, 2019, 3:30 PM – March 5, 2019, 3:42 PM

  Presenters

  • Ahmed Roman

    Physics, Emory University

  Authors

  • Damian Hernandez

    Physics, Emory University, Centro Atómico Bariloche

  • Ahmed Roman

    Physics, Emory University

  • Ilya Nemenman

    Emory University, Physics, Emory University

  View abstract →

• Inferring geometric embeddings for single cell data

  ORAL

  March 5, 2019, 3:42 PM – March 5, 2019, 3:54 PM

  Presenters

  • Mor Nitzan

    Harvard University

  Authors

  • Mor Nitzan

    Harvard University

  • Nikos Karaiskos

    Max Delbruck Center for Molecular Medicine

  • Nir Friedman

    The Hebrew University of Jerusalem

  • Nikolaus Rajewsky

    Max Delbruck Center for Molecular Medicine

  View abstract →

• Interpreting time series data from dynamic signaling pathways in single cells

  ORAL

  March 5, 2019, 3:54 PM – March 5, 2019, 4:06 PM

  Presenters

  • Weerapat Pittayakanchit

    University of Chicago

  Authors

  • Weerapat Pittayakanchit

    University of Chicago

  • Kabir Husain

    James Franck Institute, University of Chicago, James Franck Institute, University of Chicago

  • Arvind Murugan

    James Franck Institute, University of Chicago, James Franck Institute, physics, University of Chicago, University of Chicago

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• Learning image models for optimal information extraction: image registration from first principles

  ORAL

  March 5, 2019, 4:06 PM – March 5, 2019, 4:18 PM

  Presenters

  • Colin Clement

    Cornell University

  Authors

  • Colin Clement

    Cornell University

  • Matthew Bierbaum

    Cornell University

  • James Patarasp Sethna

    Cornell University

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• Stochastic Nonlinear Dynamics of Confined Cell Migration

  ORAL

  March 5, 2019, 4:18 PM – March 5, 2019, 4:30 PM

  Presenters

  • David Brückner

    Arnold Sommerfeld Center for Theoretical Physics and Center for NanoScience, Ludwig-Maximilians-University Munich

  Authors

  • David Brückner

    Arnold Sommerfeld Center for Theoretical Physics and Center for NanoScience, Ludwig-Maximilians-University Munich

  • Alexandra Fink

    Faculty of Physics and Center for Nanoscience, Ludwig-Maximilians-University Munich

  • Christoph Schreiber

    Faculty of Physics and Center for Nanoscience, Ludwig-Maximilians-University Munich

  • Joachim Rädler

    Faculty of Physics and Center for Nanoscience, Ludwig-Maximilians-University Munich

  • Chase Broedersz

    Arnold Sommerfeld Center for Theoretical Physics and Center for NanoScience, Ludwig-Maximilians-University Munich

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• Entropy-based idealization of complex single-molecule time trajectories from nanoelectronic biosensors: application to the detection and modeling of non-stationary molecular dynamics

  ORAL

  March 5, 2019, 4:30 PM – March 5, 2019, 4:42 PM

  Presenters

  • Mohamed OUQAMRA

    Bionanoelectronics, Institute for Research in Immunology and Cancer Institute, Université de Montréal

  Authors

  • Mohamed OUQAMRA

    Bionanoelectronics, Institute for Research in Immunology and Cancer Institute, Université de Montréal

  • Delphine Bouilly

    Physics, Universite de Montreal, Université de Montréal, Bionanoelectronics, Institute for Research in Immunology and Cancer Institute

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• Predicting sequence-specific mutation rates in DNA

  ORAL

  March 5, 2019, 4:42 PM – March 5, 2019, 4:54 PM

  Presenters

  • Martha Villagran

    Dept. of Physics and Texas Center for Superconductivity, University of Houston, Department of Physics and Texas Center for Superconductivity, University of Houston

  Authors

  • Martha Villagran

    Dept. of Physics and Texas Center for Superconductivity, University of Houston, Department of Physics and Texas Center for Superconductivity, University of Houston

  • Nikolaos Mitsakos

    Department of Mathematics, University of Houston

  • Ricardo Azevedo

    Department of Biology and Biochemistry, University of Houston

  • John H Miller

    Dept. of Physics and Texas Center for Superconductivity, University of Houston, Department of Physics and Texas Center for Superconductivity, University of Houston

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• The Effects of Non-Specific Binding Kinetics on Fluorescence Activated Cell Sorting (FACS)

  ORAL

  March 5, 2019, 4:54 PM – March 5, 2019, 5:06 PM

  Presenters

  • Bhaven Mistry

    Biomathematics, UCLA

  Authors

  • Bhaven Mistry

    Biomathematics, UCLA

  • Thomas Chou

    Mathematics, UCLA

  View abstract →

• Reverse-time inference of targeted biological dynamics

  ORAL

  March 5, 2019, 5:06 PM – March 5, 2019, 5:18 PM

  Presenters

  • Nicolas Lenner

    Max Planck Institute for Dynamics and Self-Organization

  Authors

  • Nicolas Lenner

    Max Planck Institute for Dynamics and Self-Organization

  • Stephan Eule

    Max Planck Institute for Dynamics and Self-Organization

  • Fred Wolf

    Max Planck Institute for Dynamics and Self-Organization

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• Information flow and the accuracy of concentration measurements in a genetic network

  ORAL

  March 5, 2019, 5:18 PM – March 5, 2019, 5:30 PM

  Presenters

  • Marianne Bauer

    Princeton University

  Authors

  • Marianne Bauer

    Princeton University

  • William Bialek

    Physics, Princeton University and The CUNY Graduate Center, Princeton University

  • Thomas Gregor

    Physics, Princeton University and Institut Pasteur, Princeton University

  • Mariela D Petkova

    Biophysics, Harvard University

  • Eric Wieschaus

    Molecular Biology, Princeton University, Princeton University

  View abstract →