Morphogenesis II

Presentations

• Statistical machine learning for learning representations of embryonic development

  ORAL · Invited

  March 5, 2024, 4:00 PM – March 5, 2024, 4:36 PM

  Publication: 1) A computational pipeline for spatial mechano-transcriptomics (submitted manuscript, under review)
  Adrien Hallou, Ruiyang He, Benjamin D. Simons, Bianca Dumitrascu
  2) Learning spatial and temporal representations of developing embryos and organs (to be submitted)
  Jiawei Wang, Jinzheng Ren, James Sharpe, Bianca Dumitrascu# and John Marioni#

  Presenters

  • Bianca Dumitrascu

    Columbia University

  Authors

  • Bianca Dumitrascu

    Columbia University

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• TubULAR: Tracking in toto deformations of dynamic tissues via constrained maps

  ORAL

  March 5, 2024, 4:36 PM – March 5, 2024, 4:48 PM

  Publication: Mitchell & Cislo. "TubULAR: Tracking in toto deformations of dynamic tissues via constrained maps." Nature Methods (accepted)

  Presenters

  • Noah P Mitchell

    University of California, Santa Barbara

  Authors

  • Noah P Mitchell

    University of California, Santa Barbara

  • Dillon J Cislo

    University of California, Santa Barbara

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• Distinguishing between stereotyped patterns and developmental noise in Drosophila wing cell sizes

  ORAL

  March 5, 2024, 4:48 PM – March 5, 2024, 5:00 PM

  Presenters

  • Avik B Mondal

    University of Michigan

  Authors

  • Avik B Mondal

    University of Michigan

  • Daniel McCusker

    University of Michigan

  • Dalmiro Blanco-Obregon

    Institut Curie, SL Research University

  • Pierre Leopold

    Institut Curie, PSL Research University

  • David K Lubensky

    University of Michigan

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• Local and collective cellular forces driving neural tube closure

  ORAL

  March 5, 2024, 5:00 PM – March 5, 2024, 5:12 PM

  Presenters

  • Fernanda L Pérez Verdugo

    Carnegie Mellon University

  Authors

  • Fernanda L Pérez Verdugo

    Carnegie Mellon University

  • Eirini Maniou

    University of Padova

  • Gabriel L Galea

    University College London

  • Shiladitya Banerjee

    Carnegie Mellon University

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• Direct application of tissue-scale tension to epithelia reveals mechanical coupling of germ layers and multi-scale mechanical properties in the developing chick embryo

  ORAL

  March 5, 2024, 5:12 PM – March 5, 2024, 5:24 PM

  Presenters

  • Panagiotis Oikonomou

    Columbia University

  Authors

  • Panagiotis Oikonomou

    Columbia University

  • Lisa M Calvary

    Columbia University

  • Helena C Cirne

    Columbia University

  • Andreas E Welch

    Columbia University

  • Nandan L Nerurkar

    Columbia University

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• Bilateral cellular flows initiate left-right asymmetry during early gastrulation in amniotes.

  ORAL

  March 5, 2024, 5:24 PM – March 5, 2024, 5:36 PM

  Presenters

  • Shubham Sinha

    University of Miami

  Authors

  • Shubham Sinha

    University of Miami

  • Rieko Asai

    Cardiovascular Research Institute, University of California, San Francisco

  • Vivek Prakash

    University of Miami

  • Takashi Mikawa

    Cardiovascular Research Institute, University of California, San Francisco

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• Mechanical and molecular self-organization principles in chick gastrulation

  ORAL · Invited

  March 5, 2024, 5:36 PM – March 5, 2024, 6:12 PM

  Publication: -Serra, M., et al. "A mechanochemical model recapitulates distinct vertebrate gastrulation modes." Science Advances, Accepted (2023).
  -Chuai, M., et al. "Reconstruction of distinct vertebrate gastrulation modes via modulation of key cell behaviors in the chick embryo." Science Advances 9.1 (2023).

  Presenters

  • Mattia Serra

    University of California San Diego, UCSD

  Authors

  • Mattia Serra

    University of California San Diego, UCSD

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• A mechano-chemical mechanism for symmetry breaking and patterning of the early chick embryo

  ORAL

  March 5, 2024, 6:12 PM – March 5, 2024, 6:24 PM

  Presenters

  • Sreejith Santhosh

    University of California San Diego

  Authors

  • Sreejith Santhosh

    University of California San Diego

  • Manli Chuai

    College of Life Sciences, University of Dundee

  • Cornelis J Weijer

    University of Dundee, College of Life Sciences, University of Dundee

  • Mattia Serra

    University of California San Diego, UCSD

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• Embryonic area homeostasis in avian gastrulation

  ORAL

  March 5, 2024, 6:24 PM – March 5, 2024, 6:36 PM

  Presenters

  • Alex M Plum

    University of California San Diego

  Authors

  • Alex M Plum

    University of California San Diego

  • Guillermo Serrano-Najera

    University of Cambridge

  • Cornelis J Weijer

    University of Dundee, College of Life Sciences, University of Dundee

  • Mattia Serra

    University of California San Diego, UCSD

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• Low dimensionality of phenotypic space as an emergent property of coordinated teams in biological regulatory networks

  ORAL

  March 5, 2024, 6:36 PM – March 5, 2024, 6:48 PM

  Publication: https://www.biorxiv.org/content/10.1101/2023.02.03.526930v2

  Presenters

  • Anantha Samrajya Shri Kishore Hari

    Indian Institute Of Science

  Authors

  • Anantha Samrajya Shri Kishore Hari

    Indian Institute Of Science

  • Mohit Kumar Jolly

    Indian Institute of Science

  • Pradyumna Harlapur

    Indian Institute of Science

  • Aashna Saxena

    Indian Institute of Science

  • Herbert Levine

    Northeastern University

  • Aishwarya Girish

    Indian Institute of Science

  • Kushal Haldar

    IISER Kolkata

  • Tanisha Malpani

    Indian Institute of Science

  View abstract →