Mechano-electrical coupling in PIEZO channels revealed from multiscale simulations

ORAL

Abstract

The mechanosensitive PIEZO ion channels are implicated in many clinical conditions, including lymphedema, xerocytosis, inflammation, chronic pain, and cancer. However, the molecular mechanisms by which PIEZO senses force remain largely unknown. PIEZO ion channels are thought to open a central pore domain through tension-induced flattening of large peripheral transmembrane domains called arms. Here, we uncover the conformational coupling between arm flattening and pore opening in PIEZO1 and PIEZO2 using hybrid-resolution Molecular Dynamics (MD) simulations. By sampling multiple independent trajectories under physiological activation tension, we reveal an intricate clockwork gating mechanism in which arm flattening correlates with an anticlockwise rotation of the pore relative to the arms and with a clockwise twisting of inner pore helices, enabling dilation and hydration of a transmembrane pore gate. Remarkably, pore dilation is accompanied by the creation of large interhelical gaps filled with lipids, resulting in a fully conducting open walled by lipids and protein. Our work reveals how large-scale rearrangements of mechanosensory domains are precisely funneled into subtle yet complex gating motions in PIEZO channels. The MD-generated open-state model enabled us to discover two new PIEZO1 small-molecule activators through virtual screening.

*This work was supported by NIH grant R01GM130834. The authors wish to acknowledge the computational resources provided by WesternU Molecular Computing Core (WMCC), the Advanced Cyberinfrastructure Coordination Ecosystem: Services &Support (ACCESS) program allocations (BIO240109 BIO240033), and the Pittsburgh Supercomputing Center Anton2 allocations PSCA17006P-18007P.

Publication: 1. Wen C., Luo, Y., Madsen, J., Optimizing coarse-grained models for large-scale membrane protein simulations, bioRxiv doi.org/10.1101/2024.05.13.594009, 2024
2. Wijerathne T., Bhatt A., Jiang W., Luo Y., Lacroix J., Mammalian PIEZO channels rectify anionic currents, bioRxiv, 2024.08. 23.609388, 2024
3. Li S., Wu B., Luo Y., Han W., Simulation of functional motion of super large biomolecules with a mixed-resolution model, J. Chem. Theory Comput., 2024
4. Jiang W., Wijerathne, T., Zhang H., Lin Y., Jo S., Im W., Lacroix J., Luo Y., Structural and thermodynamic framework for PIEZO1 modulation by small molecules, PNAS, 120, e2310933120, 2023
5. Jiang W., et. al., Lacroix J., Rohacs T., Luo Y., Crowding-induced opening of the mechanosensitive Piezo1 channel in silico. Commun. Biol. 4, 84, 2021
6. Jiang, W., Ling, Y., Luo, Y., Mechanical properties of anionic asymmetric bilayers from atomistic simulations, J. Chem. Phys., 2021
7. Botello-Smith W, Zhang H, Ozkan AD, Jiang W, Pham CN, Lacroix J, Luo Y, A molecular Mechanism for the Chemical Activation of the Mechanosensitive Piezo1 Channel, Nat. Commun., DOI: 10.1038/s41467-019-12501-1.

Presenters

  • Yun L Luo

    • Western University of Health Sciences

Authors

  • Yun L Luo

    • Western University of Health Sciences
  • Shu Li

    • Centre for Artificial Intelligence Driven Drug Discovery, Faculty of Applied Sciences, Macao Polytechnic University, Macao SAR 999078
  • Wei Han

    • Department of Chemistry, Faculty of Science, Hong Kong Baptist University, Hong Kong SAR 999077
  • Aashish Bhatt

    • Western University of Health Sciences