Physics of Proteins: Design & Prediction

FOCUS · MAR-M71 · ID: 3112437

Presentations

  • ORAL

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    Presenters

    • Farshid Mohammad-Rafiee

      • Department of Physics and Astronomy, University of Pennsylvania,

    Authors

    • Farshid Mohammad-Rafiee

      • Department of Physics and Astronomy, University of Pennsylvania,

    • Mengyi Sun

      • Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory

    • Marcelo Guzmán

      • University of Pennsylvania

    • Felipe Martins

      • University of Pennsylvania

    • David M McCandlish

      • Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory

    • Joshua B Plotkin

      • Department of Biology, University of Pennsylvania

    • Andrea J Liu

      • University of Pennsylvania

    View abstract →

  • ORAL · Invited

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    Publication: [1] Levieux G, Tiger G, Natkin S, Zagury JF, Montes M. FD169: UDock, the protein docking entertainment system. Faraday Discuss. 2014, 169 (1): 425-441

    [2] Plateau-Holleville C, Guionnière S, Boyer B, Jimenez-Garcia B, Levieux G, Merillou S, Maria M, Montes M. UDock2: Interactive real-time multi-body protein-protein docking software. Bioinformatics, 2023; 39 (10), btad609

    [3] Plateau-Holleville C, Maria M, Merillou S, Montes M. Efficient GPU computation of large protein Solvent-Excluded Surface. IEEE Trans Vis Comput Graph, 2024

    [4] Maria M, Guionnière S, Dacquay N, Plateau–Holleville C, Guillaume V, Larroque V, Lardé J, Mérillou S, Lagarde N, Naimi Y, Piquemal JP, Levieux G, Montes M. VTX: Real-Time High-Performance Molecular Structure and Dynamics Visualization Software. Submitted manuscript

    Presenters

    • Matthieu Montes

      • Conservatoire National des Arts et Metiers, Hesam Universite

    Authors

    • Matthieu Montes

      • Conservatoire National des Arts et Metiers, Hesam Universite

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  • ORAL

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    Publication: 1. Wen C., Luo, Y., Madsen, J., Optimizing coarse-grained models for large-scale membrane protein simulations, bioRxiv doi.org/10.1101/2024.05.13.594009, 2024
    2. Wijerathne T., Bhatt A., Jiang W., Luo Y., Lacroix J., Mammalian PIEZO channels rectify anionic currents, bioRxiv, 2024.08. 23.609388, 2024
    3. Li S., Wu B., Luo Y., Han W., Simulation of functional motion of super large biomolecules with a mixed-resolution model, J. Chem. Theory Comput., 2024
    4. Jiang W., Wijerathne, T., Zhang H., Lin Y., Jo S., Im W., Lacroix J., Luo Y., Structural and thermodynamic framework for PIEZO1 modulation by small molecules, PNAS, 120, e2310933120, 2023
    5. Jiang W., et. al., Lacroix J., Rohacs T., Luo Y., Crowding-induced opening of the mechanosensitive Piezo1 channel in silico. Commun. Biol. 4, 84, 2021
    6. Jiang, W., Ling, Y., Luo, Y., Mechanical properties of anionic asymmetric bilayers from atomistic simulations, J. Chem. Phys., 2021
    7. Botello-Smith W, Zhang H, Ozkan AD, Jiang W, Pham CN, Lacroix J, Luo Y, A molecular Mechanism for the Chemical Activation of the Mechanosensitive Piezo1 Channel, Nat. Commun., DOI: 10.1038/s41467-019-12501-1.

    Presenters

    • Yun L Luo

      • Western University of Health Sciences

    Authors

    • Yun L Luo

      • Western University of Health Sciences

    • Shu Li

      • Centre for Artificial Intelligence Driven Drug Discovery, Faculty of Applied Sciences, Macao Polytechnic University, Macao SAR 999078

    • Wei Han

      • Department of Chemistry, Faculty of Science, Hong Kong Baptist University, Hong Kong SAR 999077

    • Aashish Bhatt

      • Western University of Health Sciences

    View abstract →

  • ORAL

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    Publication: 1. AGUILAR PINEDA GE and OLIVARES QUIROZ L. Phys Biol, 18, 066002, (2021). DOI: 10.1088/1478-3975/ac211b.
    2. OLIVARES QUIROZ L. Journal of Complex Networks, Volume 12, Issue 4, August 2024, cnae033, https://doi.org/10.1093/comnet/cnae033
    3. José A Vélez-Pérez and L Olivares-Quiroz 2024 Phys. Scr. 99 1059c8. DOI 10.1088/1402-4896/ad7a2d

    Presenters

    • Luis Olivares-Quiroz

      • Universidad Autónoma de la Ciudad de México UACM

    Authors

    • Luis Olivares-Quiroz

      • Universidad Autónoma de la Ciudad de México UACM

    • Ohtli Quiroz-Sánchez

      • CINVESTAV

    View abstract →

  • ORAL

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    Presenters

    • Kavindi Madduma Hewage

      • University of North Dakota

    Authors

    • Kavindi Madduma Hewage

      • University of North Dakota

    • Carlos Miguel Munoz

      • University of North Dakota

    • Mehmet Ozdogan

      • University of North Dakota

    • Nuri Oncel

      • University of North Dakota

    • Catherine Brissette

      • University of North akota

    • Yvonne Tourand

      • University of North dakota

    • Timothy Casselli

      • University of North dakota

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  • ORAL

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    Publication: M. Zhang et al. Real-time detection of 20 amino acids and discrimination of pathologically relevant peptides with functionalized nanopore. 2024, Nature Methods, 21(4), 609–618.

    Presenters

    • Ming Zhang

      • Sichuan University

    Authors

    • Ming Zhang

      • Sichuan University

    • Chao Tang

      • Sichuan University

    • Zichun Wang

      • Sichuan University

    • Shanchuan Chen

      • Sichuan University

    • Lu Chen

      • Sichuan University

    • Jia Geng

      • Sichuan University

    View abstract →